Friday, September 24, 2010

Agilent Result from Loren in CA

Analysis performed:

Using MassHunt software.
1. Identify the peaks in MC38-14 and ME38-15, using peak size 5000 as cutoff, save the peaks in H:\Data\Data2010\PheromoneMSID\MMU\MC-14_ME38-15ionlist.csv.

2. Use the mass in this file to exclude the peaks found in ME38-14 and ME38-15, with a peak cutoff of 1000.
 Save the identified peaks in
H:\Data\Data2010\PheromoneMSID\MMU\ME38&39-14excl.csv.

3. Use the list in this second file, to screen for peaks in ME38-12, ME38-13, ME39-12 and ME39-13. Only peaks matches the masses are selected. Also use peak cutoff at 800. Save file in:
H:\Data\Data2010\PheromoneMSID\MMU\ME38&39-12&13excl_800.csv

4. Use the new list to see if any peak is present in ME39-15.
The candidates with a plus sign in the "candidate" worksheet are potential candidates, while the ones with a "x" are present in comparable level in ME39-15 and are excluded.

Several observations:

1. 316 peaks are found in this list, but they are excludes as real candidate.
2. 431 also found. but too many potential formulas.
3. Large MW candidates are likely column materials.
4. Small MW candidates are too common.

Best candidates:
371.2667 54627 C20 H37 N O5
371.2669 17983 C20 H37 N O5
371.2671 72949 C21 H41 N S2
371.2672 78853 C20 H37 N O5
371.2672 67729 C21 H41 N S2
371.2673 23201 C15 H34 N9 P


After discussion with Shane (10/25/10), we decided that 371.2667/2669, Likely formula: C20H37NO5:
Two candidates are glutamic acid linked to a long chain or an aspartic acid with a long chain.









































431.2302 14209  C18 H34 N5 O5 P
431.2306 39474  C24 H33 N O6
Other candidates: C20H29N7O4 (431.2307) =ArgTrpAla